@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2021},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2020},
  note = {R package version 0.21},
  url = {https://github.com/rstudio/bookdown},
}

@Manual{R-colorfulVennPlot,
  title = {colorfulVennPlot: Plot and add custom coloring to Venn diagrams for 2-dimensional,
3-dimensional and 4-dimensional data.},
  author = {Elliot Noma and Aliona Manvae},
  year = {2013},
  note = {R package version 2.4},
  url = {https://CRAN.R-project.org/package=colorfulVennPlot},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain Fran?ois and Lionel Henry and Kirill Müller},
  year = {2021},
  note = {R package version 1.0.5},
  url = {https://CRAN.R-project.org/package=dplyr},
}

@Manual{R-eulerr,
  title = {eulerr: Area-Proportional Euler and Venn Diagrams with Ellipses},
  author = {Johan Larsson},
  year = {2020},
  note = {R package version 6.1.0},
  url = {https://CRAN.R-project.org/package=eulerr},
}

@Manual{R-futile.logger,
  title = {futile.logger: A Logging Utility for R},
  author = {Brian Lee Yung Rowe},
  year = {2016},
  note = {R package version 1.4.3},
  url = {https://CRAN.R-project.org/package=futile.logger},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2020},
  note = {R package version 3.3.2},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-ggvenn,
  title = {ggvenn: Draw Venn Diagram by ggplot2},
  author = {Linlin Yan},
  year = {2021},
  note = {R package version 0.1.8},
}

@Manual{R-ggVennDiagram,
  title = {ggVennDiagram: A ggplot2 Implement of Venn Diagram},
  author = {Chun-Hui Gao},
  year = {2021},
  note = {R package version 1.1.0},
  url = {https://github.com/gaospecial/ggVennDiagram},
}

@Manual{R-gplots,
  title = {gplots: Various R Programming Tools for Plotting Data},
  author = {Gregory R. Warnes and Ben Bolker and Lodewijk Bonebakker and Robert Gentleman and Wolfgang Huber and Andy Liaw and Thomas Lumley and Martin Maechler and Arni Magnusson and Steffen Moeller and Marc Schwartz and Bill Venables},
  year = {2020},
  note = {R package version 3.1.0},
  url = {https://github.com/talgalili/gplots},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2021},
  note = {R package version 1.31},
  url = {https://yihui.org/knitr/},
}

@Manual{R-nVennR,
  title = {nVennR: Create n-Dimensional, Quasi-Proportional Venn Diagrams},
  author = {Victor Quesada},
  year = {2021},
  note = {R package version 0.2.3},
  url = {https://CRAN.R-project.org/package=nVennR},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Lionel Henry and Hadley Wickham},
  year = {2020},
  note = {R package version 0.3.4},
  url = {https://CRAN.R-project.org/package=purrr},
}

@Manual{R-rJava,
  title = {rJava: Low-Level R to Java Interface},
  author = {Simon Urbanek},
  year = {2020},
  note = {R package version 0.9-13},
  url = {http://www.rforge.net/rJava/},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2021},
  note = {R package version 2.7},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}

@Manual{R-RVenn,
  title = {RVenn: Set Operations for Many Sets},
  author = {Turgut Yigit Akyol},
  year = {2019},
  note = {R package version 1.1.0},
  url = {https://CRAN.R-project.org/package=RVenn},
}

@Manual{R-UpSetR,
  title = {UpSetR: A More Scalable Alternative to Venn and Euler Diagrams for
Visualizing Intersecting Sets},
  author = {Nils Gehlenborg},
  year = {2019},
  note = {R package version 1.4.0},
  url = {http://github.com/hms-dbmi/UpSetR},
}

@Manual{R-venn,
  title = {venn: Draw Venn Diagrams},
  author = {Adrian Dusa},
  year = {2020},
  note = {R package version 1.9},
  url = {https://CRAN.R-project.org/package=venn},
}

@Manual{R-VennDiagram,
  title = {VennDiagram: Generate High-Resolution Venn and Euler Plots},
  author = {Hanbo Chen},
  year = {2018},
  note = {R package version 1.6.20},
  url = {https://CRAN.R-project.org/package=VennDiagram},
}

@Manual{R-venneuler,
  title = {venneuler: Venn and Euler Diagrams},
  author = {Lee Wilkinson},
  year = {2011},
  note = {R package version 1.1-0},
  url = {https://CRAN.R-project.org/package=venneuler},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://github.com/rstudio/bookdown},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Article{nVennR2018,
  title = {nVenn: generalized, quasi-proportional Venn and Euler diagrams},
  author = {Jose G. Perez-Silva and Miguel Araujo-Voces and Victor Quesada},
  journal = {Bioinformatics},
  year = {2018},
  volume = {34},
  number = {13},
  pages = {2322–2324},
  url = {https://doi.org/10.1093/bioinformatics/bty109},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  note = {ISBN 9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  note = {ISBN 9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

